Ecommerce Accounting Services That Scale With You
From Shopify and Amazon to WooCommerce, Walmart, and your payment processors, we turn scattered payouts into one accurate, tax ready set of books.
One Business, a Dozen Payout Schedules
A Shopify payout nets out fees before it hits your bank. An Amazon settlement bundles two weeks of sales, refunds, and ad spend into one number. PayPal and Stripe each take their own cut on their own schedule. Add inventory sitting across a warehouse, a 3PL, and FBA, and it's no surprise most sellers can tell you their bank balance but not their actual margin. Accountsly's ecommerce accounting services exist to close that gap: we pull every channel into one clean set of books, so growth decisions are based on real numbers, not what happened to land in the account this week.
Why One Bookkeeping Method Doesn't Fit Every Sales Channel
A single-channel e-commerce store can often get by on simple bookkeeping. The moment a brand adds a second or third channel, that breaks down fast. Fees look different on every platform, returns get processed differently depending on where the sale happened, and inventory has to be tracked by SKU across every location it sits in, not just totaled at the end of the month. Generic bookkeeping usually catches the deposit and calls it done. We go a level deeper, matching every order, fee, and refund back to its source before it ever hits your general ledger. If most of your volume runs through one marketplace, our accounting for Amazon sellers service covers that in more depth.
Single Channel
One fee schedule · One deposit to reconcile
Multi-Channel
Different fees, returns & SKU tracking per platform
Our Ecommerce Accounting Services
Coverage that scales from a single storefront to a full multi-channel operation:
Multi-Channel Order & Payout Reconciliation
We match every order to its payout across Shopify, Amazon, WooCommerce, Walmart, and your payment processors, so nothing gets recorded twice or missed entirely.
Inventory & Landed Cost Accounting
Freight, duties, and warehousing costs get built into your cost of goods sold by SKU, not averaged out, so your margins are accurate down to the product level.
Returns, Refunds & Chargeback Tracking
We log each return and chargeback against the original sale, so refunds and disputes get subtracted from revenue instead of quietly going untracked.
Multi-State Sales Tax & Nexus Monitoring
We keep an eye on your sales activity across states so you know the moment you've crossed an economic nexus threshold, and get filings sorted before a state ever has to send you a notice.
Channel Fee & Ad Spend Categorization
Platform commissions, payment processing fees, and ad spend are broken out by channel, so you can see which one is actually profitable.
Monthly Close & Cash Flow Reporting
A clear monthly P&L and cash flow snapshot, meant for real-time decisions, not a once-a-year tax scramble.
Why Work With Expert Ecommerce Accountants Who Know Multi-Channel Selling
A bookkeeper without e-commerce experience will happily book a Shopify payout as one deposit and move on, missing the fees, discounts, and refunds bundled inside it. Ours won't. Our team works inside marketplace and payment platform reports every day, so we already know what a chargeback reversal looks like, how to treat a marketplace-collected sales tax line, and why your COGS should never be a single flat number across every SKU.
Once volume picks up, bookkeeping alone stops answering the questions that matter, like whether to double down on paid ads on one channel or pull back on another. That's the point where our CFO services and strategic tax planning step in, giving you forecasts and a tax strategy built around actual channel-level margins, not just last year's return.
Ecommerce Bookkeeping Services vs Full-Service Accounting
Most sellers start with bookkeeping: recording orders, matching payouts, keeping the books current. That's usually enough in year one. Full accounting adds forecasting, tax planning, and margin analysis by channel and by product, the kind of insight that matters once you're making decisions about ad budgets, new marketplaces, or hiring. If your books are behind rather than just basic, our catch up accounting service gets historical records current first, so whichever level you need starts from clean data.
Bookkeeping
Recording orders · Matching payouts
Full Accounting
Forecasting & tax planning · Channel margin analysis
The Software Behind Your Books
We build books in Xero and QuickBooks, connected to your actual sales channels through tools like A2X and Synder, which pull orders, fees, and payouts in automatically instead of relying on CSV exports and manual entry. Whether you run one e-commerce storefront or sell across half a dozen platforms, the goal is the same: software that fits your stack, not one that makes you rebuild it.
E-commerce Channels We Support
Shopify
Order-level revenue, discounts, and app fees reconciled against every payout.
Amazon (FBA & FBM)
Settlement reports broken down line by line, including reserve holds and reimbursements.
WooCommerce
Payment gateway fees and plugin-driven discounts tracked alongside your store data.
Walmart Marketplace
Commission and fulfillment fees categorized separately from product revenue.
eBay & Etsy
Marketplace and payment processing fees reconciled per listing category.
BigCommerce
Storefront revenue and payment processor fees reconciled against your store's payout schedule, the same way we handle Shopify and WooCommerce.
Accounting for Online Sellers at Every Stage
Some of our clients run a single Shopify storefront. Others sell the same catalog across Amazon, Walmart, and their own site, with a subscription box business layered on top. A few are still finding product-market fit and just need clean books from day one. Whatever stage or channel mix you're at, we scope the work to match it, not a one-size template.
Ready to Outsource Ecommerce Accounting Services?
We start with a short call about how you sell, which platforms and tools are in play, and how far behind, or not, your books are. From there you get a straightforward plan, whether that's a historical catch-up project or starting clean from this month forward. A lot of growing brands find it's simpler to hand this off than to hire and train an in-house team before they're ready for one. Compare plans and pricing, or reach out to talk specifics.
Frequently Asked Questions
What do ecommerce accounting services include?
Multi-channel payout reconciliation, inventory and cost of goods sold tracking, sales tax compliance, and monthly financial reporting, all built around however many platforms you sell on.
Is this a monthly bookkeeping service for ecommerce, or a one-time cleanup?
Both. We work as an ongoing monthly service, or as a one-time catch-up project first if your books are behind.
Do I need a CPA for ecommerce, or is bookkeeping enough?
It depends on where you are. Early on, solid monthly bookkeeping usually covers it. Once you're making bigger calls around growth, ad spend, or entity structure, that's typically when sellers bring in a CPA for ecommerce alongside their bookkeeping.
How does an ecommerce tax accountant handle multi-state sales tax?
We monitor where you've crossed economic nexus thresholds as you grow and keep filings current state by state.
What makes your team different from a general bookkeeper?
We work inside marketplace and payment reports daily, so channel-specific fees, chargebacks, and multi-location inventory are handled correctly the first time, not corrected after the fact.
